The problem is that the meta-narrative took over the narrative. For me anyway.
Ideally I think your rampant symbolism and sub text should unite with the main subject at the end of the story. But thanks to much that happened even after the Matrix they had become inextricable before the sequels even started. All the weird plot contortions and introductions get this instant apology as being about something else, despite actively working against the main story being as coherent as we'd like it to be. You even get people saying that the fight scenes being ever more technical and lifeless as things went on is a metaphor (man) for the (like) deterministic world view the film is (like) trying to slide into your consciousness. Hmm, no, sorry. Being engaging is more important.
I'm not against it as a project and I've warmed to it over the years, after my initial irritation. I generally enjoy it and get what they're trying to do. But there's almost no one who can pull this off well. It's ambitious but not impossible. Try as they might the Watchowskis together couldn't be one Alan Moore.




